From Augix' Wiki

Contents 1 Profile 2 save-password 3 notified via email when job's status changes 4 sge script 5 submit script 6 Other tips 6.1 SGE command

Profile

User private default request files are processed under the locations $HOME/.sge_request and $cwd/.sge_request. The working directory local default request file has the highest precedence

save-password

run

save-password

notified via email when job's status changes

send email when the job ends:

-m e
-M your@email

sge script

job.sge

#$ -S /bin/sh
 
# Change to the current working directory upon starting of the job
#$ -cwd
 
# set the required cpu time of your job
# HH:MM:SS
#$ -l h_cpu=20:00:00
 
# set the required memory:
# normal:3.7 GB, 72 h, 4 slots per host.
# bigmem: 7.7 GB, 72 h, 2 slots per host.
# hugemem: 15.7 GB, 72 h, 1 slot per host.
#$ -l h_vmem=7000M
 
# don't flood myself with e-mail
#$ -m n
 
# join the error and standard output streams
#$ -j yes
 
# Defines or redefines the path used for the standard error  stream 
# and the standard output stream of the job. 
#$ -e ./sge.out/
#$ -o ./sge.out/
 
# name of the job
#$ -N mapping_simulation
 
echo $1 | ./job.Rf

submit script

for i in `seq 1 100`; do qsub job.sge $i; done

Other tips

SGE command

• submit jobs

qsub

• check the state of jobs

qstat

• check the state of a particular job

qstat -j JOB_ID

• check the state of severs

qstat -g c

• delete jobs

qdel -u augix